DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) neuraminidase
(NA) gene, complete cds.
ACCESSION EU672460
VERSION EU672460.1 GI:188526736
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1373)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..1373
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526736&from=9&to=1358&view=gbwithparts) 9..1358
/gene="NA"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526736&from=9&to=1358&view=gbwithparts) 9..1358
/gene="NA"
/codon_start=1
/product="neuraminidase"
/protein_id="ACD62245.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62245.1)"
/db_xref="GI:188526737"
/translation="MNPNQKIITIGSVCMIIGIVSLMLQIGNMISIWVSHSIQTGNQH
QAEPIRNTNFLTENAVASVTLAGNSSLCPIRGWAVHSKDNSIRIGSKGDV FVIREPFI
SCSHMECRTFFLTQGALLNDKHSNGTVKDRSPHRTLMSCPVGEAPSPYNS RFESVAWS
ASACHDGTSWLTIGISGPDNGAVAVLKYNGIITDTIKSWRNNILRTQESE CACVNGSC
FTVMTDGPSNGQASYKIFKIEKGKVVKSVELNAPNYHYEECSCYPDAGEI ICVCRDNW
HGSNRPWISFNQNLEYQIGYICSGVFGDNPRPNDGTGSCGPMSPNGAYGI KGFSFKYG
NGVWIGRTKSTNSRSGFEMIWDPNGWTGTDSEFSVKQDIVAITDWSGYSG SFVQHPEL
TGLDCIRPCFWVELIRGRPKESTIWTSGSSISFCGVNSDTVSWSWPDGAE LPFTIDK"
ORIGIN
1 agttcaaaat gaatccaaat cagaagataa taaccattgg atcagtctgt atgataattg
61 gaatagttag cttaatgtta cagattggga acatgatctc aatatgggtc agtcattcaa
121 ttcaaacagg gaatcaacac caagctgaac caatcagaaa taccaatttt cttactgaga
181 acgctgtggc ttcagtaaca ttagcgggca attcatctct ttgccccatt agaggatggg
241 ctgtacacag taaagacaac agtataagga ttgggtccaa gggggatgtg tttgtaatta
301 gagagccgtt catctcatgc tcccatatgg aatgcagaac tttctttttg actcagggag
361 ccttactgaa tgacaagcac tccaacggga ctgtcaaaga caggagccct cacagaacac
421 taatgagttg tcctgtgggt gaggctccct ccccatataa ctcgaggttt gagtctgttg
481 cttggtcagc aagtgcttgc catgatggca ccagttggtt gacaattgga atttctggtc
541 cagacaatgg ggctgtggct gtattgaaat acaatggcat aataacagac actatcaaga
601 gttggaggaa caacatactg aggactcaag agtctgaatg tgcatgtgta aatggctctt
661 gctttactgt aatgacagat ggaccaagta atggacaggc atcatataag atcttcaaaa
721 tagaaaaagg gaaagtagtt aaatcggtcg aattgaatgc tcctaattat cactatgagg
781 aatgctcctg ttatcctgat gctggcgaaa taatatgtgt gtgcagggac aattggcatg
841 gctcaaatag gccatggata tctttcaatc agaatttgga gtatcaaata ggatatattt
901 gcagtggggt tttcggagac aatccacggc caaatgatgg gacaggtagt tgtggtccaa
961 tgtcccctaa cggggcatat gggataaaag ggttttcatt taaatacggt aatggtgttt
1021 ggatcgggag aaccaaaagc actaattcca gaagcggttt tgaaatgatt tgggatccaa
1081 atgggtggac tggaacggac agtgaatttt cggtgaaaca agatatagta gcaataactg
1141 attggtcagg atatagcggg agttttgtcc agcatccgga actgacagga ttagactgca
1201 taagaccttg cttctgggtt gagttaatca gggggcggcc aaaagagagc acaatttgga
1261 ctagtgggag cagcatatct ttttgtggtg taaatagtga cactgtgagt tggtcttggc
1321 cagacggtgc tgagttgcca ttcaccattg acaagtagtt tattcaaaaa act
DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) polymerase PB2
(PB2) gene, complete cds.
ACCESSION EU672455
VERSION EU672455.1 GI:188526725
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 2316)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..2316
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526725&from=16&to=2295&view=gbwithparts) 16..2295
/gene="PB2"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526725&from=16&to=2295&view=gbwithparts) 16..2295
/gene="PB2"
/codon_start=1
/product="polymerase PB2"
/protein_id="ACD62239.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62239.1)"
/db_xref="GI:188526726"
/translation="MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITADKRIIEMIPERNEQGQTLWSKTNDAGSDRVMVSPL AVTWWNRN
GPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDTNPGHA DLSAKEAQ
DVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKIAPLMVAYMLERE LVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVR RATVSADP
LASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFG GFTFKRTS
GSSFTKEEEVLTGNLQTLKIRVHEGYEEFTMVGQRATAILRKATRRLIQL IVSGRNEQ
SIAEAIIVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDA KVLFQNWG
IEPIDNVMGMIGLLPDMTPSTELSLRGVRVSKMGVDEYSSTERVVVSIDR FLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWE TVKIQWSQ
DPTMLYNKMEFEPFQSLVPKATRSQYSGFVRTLFQQMRDVLGTFDTVQII KLLPFAAA
PPEQSRMQFSSLTVNVRGSGMRILVRGNSPVFNYNKATKRLTILGKDAGA LTEDPDEG
TAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVV LVMKRKRD
SSILTDSQTATKRIRMAIN"
ORIGIN
1 tcaaatatat tcaatatgga aagaataaaa gaattaagag atctaatgtc acagtcccgc
61 actcgcgaga tactaacaaa aaccactgtg gaccatatgg ccataatcaa gaaatacaca
121 tcaggaagac aagagaagaa tcctgctctc agaatgaaat ggatgatggc aatgaagtat
181 ccgatcacag cggacaagag aataatagag atgattcctg aaaggaatga acaagggcag
241 acgctctgga gcaagacaaa tgatgctggg tcggacaggg tgatggtgtc ccccctagct
301 gtaacttggt ggaataggaa tgggccgacg acaagtacag ttcattatcc aaaagtttac
361 aaaacatact tcgagaaggt tgaaaggtta aaacatggaa cctttggtcc cgttcatttc
421 cgaaaccaag ttaaaatacg ccgccgagtt gatacaaacc ctggccatgc agatctcagt
481 gctaaagaag cacaagatgt tatcatggaa gttgtcttcc caaatgaagt gggagctaga
541 atattgactt cagagtcgca attgacaata acgaaagaga aaaaagaaga gctccaagac
601 tgtaagattg ctcccttaat ggttgcatac atgttggaga gggaactggt ccgcaaaacc
661 agattcctac cggtagcagg cggaacaagc agtgtgtaca ttgaagtact gcatttgact
721 caaggaacct gctgggaaca gatgtacact ccgggcggag aagtaagaaa tgacgatgtt
781 gaccagagtt tgatcattgc tgccagaaac attgttagga gagcaacggt atcagcggac
841 ccattggcat cactgctgga gatgtgtcac agcacacaaa ttggtgggat aaggatggtg
901 gacatcctta ggcaaaatcc aactgaagaa caagctgtgg atatatgcaa agcagcaatg
961 ggtctgagga tcagttcatc ctttagtttt ggaggtttca ccttcaaaag aacaagtggg
1021 tcatccttca cgaaggaaga ggaagtgctc acgggcaacc tccaaacatt gaaaataaga
1081 gtacatgagg ggtatgaaga attcacaatg gttgggcaga gggcaacagc tatcctgagg
1141 aaagcaacta gaaggctgat tcagttgata gtaagcggaa gaaacgaaca atcaatcgct
1201 gaggcaatca ttgtagcgat ggtgttctca caggaggatt gcatgataaa ggcagtccga
1261 ggcgatctaa atttcgtaaa cagagcaaac caaagattaa accccatgca tcaactcctg
1321 agacattttc aaaaggacgc aaaagtgcta tttcagaatt ggggaattga acccattgat
1381 aatgtcatgg ggatgatcgg attattacct gacatgactc ccagcacaga actgtcactg
1441 agaggagtaa gagttagtaa aatgggagtg gatgaatatt ccagcactga aagagtagtt
1501 gtaagcattg accgcttctt aagggttcga gatcagcggg ggaatgtact cttatctccc
1561 gaagaggtca gcgaaaccca gggaacagag aagttgacaa taacatattc gtcatcaatg
1621 atgtgggaaa tcaacggtcc tgagtcagtg cttgtcaaca cctatcaatg gatcatcaga
1681 aactgggaga ccgtaaaaat tcaatggtct caggacccca cgatgctgta caataagatg
1741 gagttcgaac cgttccaatc cttggtacct aaagctacca gaagtcaata cagtggattt
1801 gtgagaacat tattccaaca aatgcgtgac gtactgggga catttgatac tgtccagata
1861 ataaagctgc taccatttgc agcagcacca cctgagcaga gcagaatgca gttttcttct
1921 ctaactgtga atgtaagagg ctcaggaatg agaatacttg taaggggcaa ttctcctgtg
1981 ttcaactaca ataaggcaac caaaaggctt accattcttg gaaaggacgc aggtgcatta
2041 acagaggatc cagacgaggg gacagccgga gtggaatctg cagtactgag gggattccta
2101 attctaggca aggaggacaa aagatatgga ccagcattga gcatcaatga actgagcaat
2161 cttgcaaaag gggagaaagc taatgtgctg ataggacaag gagacgtagt gttggtaatg
2221 aaacggaaac gggactctag catacttact gacagccaga cagcgaccaa aagaattcgg
2281 atggccatca attagtgtcg aattatttaa aaacga
http://www.recombinomics.com/News/05230804/H5N1_Japan_Russia_Match.html
DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) polymerase PA
(PA) gene, complete cds.
ACCESSION EU672457
VERSION EU672457.1 GI:188526729
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 2208)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..2208
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526729&from=13&to=2163&view=gbwithparts) 13..2163
/gene="PA"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526729&from=13&to=2163&view=gbwithparts) 13..2163
/gene="PA"
/codon_start=1
/product="polymerase PA"
/protein_id="ACD62241.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62241.1)"
/db_xref="GI:188526730"
/translation="MEDFVRQCFNPMIVELAEKAMKEYGENPKIETNKFAAICTHLEV
CFMYSDFHFIDERGESIIAESGDPNALLKHRFEIIEGRDRTMAWTVVNSI CNTTGVDK
PKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTG EEMATKAD
YTLDEESRARIKTRLFTIRQEMASRGLWDSFRQSERGEETIEERFEITGT MRRLADQS
LPPNFSSLENFRAYVDGFEPNGCIEGKLSQMSKEVNARIEPFMKTTPRPL RLPDGPPC
SQRSKFLLMDALKLSIEDPSHEGEGIPLYDAIKCMKTFFGWKEPNIVKPH EKGINPNY
LLAWKQVLAELQDIENEEKIPKTKNMKKTSQLKWTLGENMAPEKVDFEDC KDVSDLKQ
YDSDEPEPRSLSSWIQSEFNKACELTDSSWIELDEIGEDIAPIEHIASMR RNYFTAEV
SHCRATEYIMKGVYINTALLNASCAAMDDFQLIPMISKCRTKEGRRKTNL YGFIIKGR
SHLRNDTDVVNFVSMEFSLTDPRLEPHKWEKYCVLEIGDMLLRTAIGQVS RPMFLYVR
TNGTSKIKMKWGMEMRRCLLQSLQQIESMIEAESSVKEKDMTKEFFETKS ETWPIGES
PKGVEESSIGKVCRTLLAKSVFNSLYASPQLEGFSAESRKLLLIVQALRD NLEPGTFD
LGGLYEAIEECLINDPWVLLNASWFNSFLTHALK"
ORIGIN
1 tactgatcca aaatggaaga ctttgtgcga caatgcttca atccaatgat cgtcgagctt
61 gcggaaaagg caatgaaaga atatggggaa aatccgaaaa tcgaaacgaa caaattcgcc
121 gcaatatgca cacacttaga agtctgcttc atgtattcgg atttccactt tattgatgaa
181 cgaggcgaat caataattgc agaatctggc gatccgaatg cattattgaa acaccgattt
241 gagataattg aagggagaga ccgaacaatg gcttggacag tggtaaatag tatctgcaac
301 accacaggag tcgataagcc taaattcctc ccagatttgt atgactacaa agagaaccga
361 ttcattgaaa ttggagtgac acggagggaa gttcacatat actacctaga aaaagcaaat
421 aagataaaat cagagaagac acacattcac atattctcat tcactggaga ggaaatggcc
481 accaaagcag actatactct tgatgaggag agcagagcaa gaatcaaaac caggctgttc
541 actataagac aagaaatggc cagtaggggt ctatgggatt cctttcgtca atccgagaga
601 ggcgaagaga caattgaaga aagatttgaa atcacaggaa ccatgcgcag gcttgccgac
661 caaagtctcc caccgaactt ctccagcctt gaaaatttta gagcctatgt ggatggattc
721 gaaccgaacg gctgcattga gggcaagctt tctcaaatgt caaaagaagt gaacgccaga
781 attgagccat ttatgaagac aacaccacgc cctctcagac tacccgatgg gcctccctgc
841 tcccagcggt cgaagttctt actgatggat gcacttaaat taagtatcga agatccaagc
901 catgaggggg aaggtatacc actatatgat gcaatcaaat gcatgaagac atttttcggc
961 tggaaagagc ccaacatcgt aaaaccacat gaaaaaggca taaatcccaa ttacctccta
1021 gcttggaagc aggtgctggc agaactccaa gacattgaaa atgaagagaa aatcccaaaa
1081 acaaagaaca tgaagaaaac aagccaatta aagtggacac ttggtgagaa catggcacca
1141 gaaaaagtag actttgagga ctgcaaagat gttagcgatc taaaacagta tgacagtgat
1201 gaaccagagc ctagatcatt atcaagctgg attcagagcg aattcaacaa agcatgcgaa
1261 ttgacagatt cgagttggat tgaacttgat gaaataggag aagatattgc tccaattgag
1321 cacattgcaa gtatgagaag aaactatttc acagcggaag tgtctcattg cagggctact
1381 gaatacataa tgaagggagt gtatataaat acagccctgt tgaatgcatc ctgtgcagcc
1441 atggatgact tccaactgat tccaatgata agcaagtgca gaaccaaaga aggaagacgg
1501 aagacaaatc tgtatggatt cattataaaa ggaaggtccc atttgaggaa cgacaccgat
1561 gtggtaaatt ttgtgagcat ggaattctct cttactgacc cgaggctgga accacacaag
1621 tgggaaaagt actgtgttct cgagatagga gacatgctcc tacgaactgc aataggccaa
1681 gtgtcaagac ccatgttcct gtatgtgaga accaatggga cttccaagat taagatgaaa
1741 tggggcatgg agatgaggcg atgccttctt caatcccttc aacaaattga gagcatgatt
1801 gaggccgagt cttctgtcaa agagaaagac atgaccaaag aattctttga aaccaaatca
1861 gaaacgtggc caattgggga atcacctaaa ggggtggagg aaagctccat tggaaaggtg
1921 tgcagaacgt tactagcaaa atctgtattc aacagcctgt atgcatctcc acaacttgag
1981 ggattttcag ctgaatcaag aaaattgctt ctcattgttc aggcacttag ggacaacctg
2041 gaacctggaa ccttcgatct tggggggcta tatgaagcaa ttgaggagtg cctgattaat
2101 gatccctggg ttttgcttaa tgcatcttgg ttcaactcct tcctcacaca tgcactgaaa
2161 tagttgtggc aatgctacta tttgctatcc atactgtcca aaaaagta
28 susceptible chickens (21 cases), 8 susceptible guinea fowls (7 cases), 3 susceptible muscovy ducks (no cases) and 3 susceptible ducks (no cases) in a backyard.
Poultry in the village were not vaccinated.
http://www.oie.int/wahid-prod/reports/en_fup_0000006957_20080411_155116.pdf
DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) nonstructural
protein 2 (NS2) and nonstructural protein 1 (NS1) genes, complete
cds.
ACCESSION EU672459
VERSION EU672459.1 GI:188526733
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 850)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..850
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526733&from=15&to=837&view=gbwithparts) 15..837
/gene="NS2"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526733&itemID=1&view=gbwithparts) join(15..44,502..837)
/gene="NS2"
/codon_start=1
/product="nonstructural protein 2"
/protein_id="ACD62243.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62243.1)"
/db_xref="GI:188526734"
/translation="MDSNTVSSFQDILVRMSKMQLASSSEDLNGMITQFGSLKLYRDS
LGEAVMRVGDFHSLQIRNGKWREQLSQKFEEIRWLIEEVRHRLKITENSF EQITFMQA
LQLLLEVEQEIRAFSFQLI"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526733&from=15&to=692&view=gbwithparts) 15..692
/gene="NS1"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526733&from=15&to=692&view=gbwithparts) 15..692
/gene="NS1"
/codon_start=1
/product="nonstructural protein 1"
/protein_id="ACD62244.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62244.1)"
/db_xref="GI:188526735"
/translation="MDSNTVSSFQVDCFLWHVRKRFADQELGDAPFLDRLRRDKKSLR
GRGNTLGLDIETATRAGKQIVERILEEESDEALKMPTSRYLTDMTLEEMS RDWFMLMP
KQKAAGSLCIKMDQAIMDKTIILKANFSVIFDRLETLILLRAFTEEGAIV GEISPLPS
LPGHTGEDVKNAIGVLIGGLEWNDNTVRVSETIQRFAWRSSDEGGRLPLP PNQKRKMA
RTIESEV"
ORIGIN
1 gtgacaaaaa cataatggat tccaacactg tgtcaagctt tcaggtagac tgctttcttt
61 ggcatgtccg caaacgattt gcagaccaag aactgggtga tgccccattc cttgaccggc
121 tccgccgaga taagaagtcc ctaagaggaa gaggcaacac tcttggtctg gacatcgaaa
181 cagctactcg tgcgggaaaa cagatagtgg agcggattct ggaggaggaa tccgatgagg
241 cacttaaaat gccgacttca cgctacctaa ctgacatgac tctcgaagaa atgtcaaggg
301 actggttcat gctcatgccc aagcagaaag cggcgggttc cctttgcatc aaaatggacc
361 aggcaataat ggataaaacc atcatattga aagcaaactt cagtgtgatt tttgaccggt
421 tagaaaccct aatactgctt agagctttca cagaagaagg agcaatcgtg ggagaaatct
481 caccattacc ttctcttcca ggacatactg gtgaggatgt caaaaatgca attggcgtcc
541 tcatcggagg acttgaatgg aatgataaca cagttcgggt ctctgaaact atacagagat
601 tcgcttggag aagcagtgat gagggtggga gacttccact ccctccaaat cagaaacgga
661 aaatggcgag aacaattgag tcagaagttt gaagaaataa ggtggctaat tgaagaagta
721 cgacatagat tgaaaattac agaaaacagc ttcgaacaga taacgtttat gcaagcctta
781 caactactgc ttgaagtgga gcaagagata agagccttct cgtttcagct tatttaatga
841 taaaaaacac
There is only one difference in the PB2 sequences. The Russian sequence has the three consecutive North American polymorphisms.
Differs from Japan at 2 positions.
http://www.recombinomics.com/News/05230805/H5N1_Fujian_Global.htmlCommentary
Global Expansion of Fujian H5N1 Confirmed
Recombinomics Commentary 20:41
May 23, 2008
The match between the Fujian H5N1 sequences in Primorsky, Russia (http://www.recombinomics.com/News/05230804/H5N1_Japan_Russia_Match.html) with multiple sequences from northern Japan and the record outbreak in South Korea (http://www.recombinomics.com/News/05210802/H5N1_Japan_Korea_Match.html) leaves little doubt that a global expansion of Fujian clade 2.3 sequences has begun. H5N1 has never been reported in northern Japan or southeastern Russia and prior outbreaks in South Korea and Japan have been at the end of the year when birds are migrating into the region. The current outbreaks are in the spring, when birds are migrating out of the region.
The tracks of outbreaks (see satellite map (http://maps.google.com/maps/ms?ie=UTF8&hl=en&msa=0&msid=106484775090296685271.00044622013f3bba138f7&t=h&ll=40.913513,141.135864&spn=15.625317,29.926758&z=5)) signal movement to the north and will likely migrate Fujian H5N1 into new regions. Although such movements may have happened previously, but not detect
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gbEU672460.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=188526736&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=1) Influenza A virus (A/chicken/Primorje/1/2008(H... 2477 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#188526736) 0.0
dbjAB436552.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=188035687&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=2) Influenza A virus (A/whooper swan/Hokkaido/1/... 2450 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#188035687) 0.0
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gbEF124316.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584217&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=52) Influenza A virus (A/duck/Fujian/10389/2005(H5... 2232 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584217) 0.0
gbEF124268.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584121&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=53) Influenza A virus (A/chicken/Fujian/584/2006(H... 2232 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584121) 0.0
gbDQ643810.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=108946272&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=54) Influenza A virus (A/human/Zhejiang/16/2006(H5... 2232 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#108946272) 0.0
gbEF124203.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118583991&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=55) Influenza A virus (A/common magpie/Hong Kong/6... 2228 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118583991) 0.0
gbEF124202.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118583989&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=56) Influenza A virus (A/crested myna/Hong Kong/54... 2228 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118583989) 0.0
gbEF124239.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584063&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=57) Influenza A virus (A/chicken/Guiyang/29/2006(H... 2226 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584063) 0.0
gbEF124315.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584215&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=58) Influenza A virus (A/duck/Fujian/10160/2005(H5... 2223 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584215) 0.0
gbEF124314.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584213&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=59) Influenza A virus (A/goose/Guiyang/4030/2005(H... 2223 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584213) 0.0
gbEF124256.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584097&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=60) Influenza A virus (A/duck/Hunan/988/2006(H5N1)... 2223 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584097) 0.0
gbEF124255.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584095&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=61) Influenza A virus (A/duck/Hunan/856/2006(H5N1)... 2223 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584095) 0.0
gbEF124237.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584059&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=62) Influenza A virus (A/chicken/Guiyang/3721/2005... 2223 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584059) 0.0
gbEF670480.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=148829011&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=63) Influenza A virus (A/duck/Hunan/15/2004(H5N1))... 2219 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#148829011) 0.0
gbCY029777.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=166782745&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=64) Influenza A virus (A/chicken/Malaysia/5223/200... 2215 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#166782745) 0.0
gbEF124243.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584071&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=65) Influenza A virus (A/duck/Shantou/13323/2005(H... 2215 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584071) 0.0
gbEF124229.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584043&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=66) Influenza A virus (A/duck/Guangxi/150/2006(H5N... 2215 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584043) 0.0
gbDQ997220.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=115382758&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=67) Influenza A virus (A/chicken/Henan/wu/2004(H5N... 2215 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#115382758) 0.0
gbAY950245.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698050&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=68) Influenza A virus (A/Chicken/Henan/210/2004 (H... 2215 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698050) 0.0
gbEF124313.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584211&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=69) Influenza A virus (A/chicken/Guiyang/3923/2005... 2214 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584211) 0.0
gbEF124303.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584191&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=70) Influenza A virus (A/duck/Guiyang/3996/2005(H5... 2210 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584191) 0.0
gbEF124249.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584083&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=71) Influenza A virus (A/chicken/Shantou/3923/2006... 2210 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584083) 0.0
gbEF124248.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584081&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=72) Influenza A virus (A/chicken/Shantou/3840/2006... 2210 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584081) 0.0
gbEF124244.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584073&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=73) Influenza A virus (A/goose/Shantou/18442/2005(... 2210 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584073) 0.0
gbDQ997211.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=115527037&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=74) Influenza A virus (A/mallard/Guangxi/wt/2004(H... 2210 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#115527037) 0.0
gbEF137708.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=133711833&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=75) Influenza A virus (A/Shenzhen/406H/2006(H5N1))... 2208 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#133711833) 0.0
gbEF124320.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584225&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=76) Influenza A virus (A/duck/Guiyang/1722/2006(H5... 2208 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584225) 0.0
gbDQ520853.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=95071271&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=77) Influenza A virus (A/chicken/Zhejiang/24/2005(... 2206 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#95071271) 0.0
gbEF124259.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584103&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=78) Influenza A virus (A/chicken/Fujian/9821/2005(... 2206 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584103) 0.0
gbEF124302.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584189&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=79) Influenza A virus (A/duck/Guiyang/3834/2005(H5... 2205 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584189) 0.0
gbAY950249.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698058&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=80) Influenza A virus (A/WildDuck/Guangdong/314/20... 2205 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698058) 0.0
gbEU429747.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=167859459&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=81) Influenza A virus (A/duck/Eastern China/304/20... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#167859459) 0.0
gbEF124254.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584093&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=82) Influenza A virus (A/duck/Hunan/344/2006(H5N1)... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584093) 0.0
gbEF124247.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584079&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=83) Influenza A virus (A/goose/Shantou/3295/2006(H... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584079) 0.0
gbEF124246.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584077&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=84) Influenza A virus (A/goose/Shantou/3265/2006(H... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584077) 0.0
embAM183681.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=109941953&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=85) Influenza A virus (A/chicken/Indonesia/R134/0... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#109941953) 0.0
gbAY770078.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=55233225&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=86) Influenza A virus (A/chicken/Hubei/489/2004(H5... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#55233225) 0.0
gbAY950250.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698059&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=87) Influenza A virus (A/swan/Guangxi/307/2004 (H5... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698059) 0.0
gbAY950248.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698056&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=88) Influenza A virus (A/Chicken/Henan/16/2004 (H5... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698056) 0.0
gbAY950247.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698054&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=89) Influenza A virus (A/Chicken/Henan/13/2004 (H5... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698054) 0.0
gbAY950246.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698052&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=90) Influenza A virus (A/Chicken/Henan/12/2004 (H5... 2201 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698052) 0.0
gbEF124271.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584127&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=91) Influenza A virus (A/duck/Fujian/720/2006(H5N1... 2199 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584127) 0.0
gbEF473083.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=129282893&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=92) Influenza A virus (A/chicken/Indonesia/11/2003... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#129282893) 0.0
gbEF473082.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=129282891&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=93) Influenza A virus (A/chicken/Indonesia/7/2003(... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#129282891) 0.0
gbDQ997254.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=115607428&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=94) Influenza A virus (A/swine/Henan/wy/2004(H5N1)... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#115607428) 0.0
gbDQ997263.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=115589724&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=95) Influenza A virus (A/swine/Guangxi/wz/2004(H5N... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#115589724) 0.0
gbAY684708.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=50956631&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=96) Influenza A virus (A/chicken/Hubei/327/2004(H5... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#50956631) 0.0
gbAY950244.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=61698048&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=97) Influenza A virus (A/chicken/Henan/01/2004(H5N... 2197 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#61698048) 0.0
gbEF124227.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=118584039&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=98) Influenza A virus (A/goose/Guangxi/5414/2005(H... 2194 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#118584039) 0.0
gbEF467811.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=126598665&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=99) Influenza A virus (A/chicken/Hong Kong/YU357/2... 2190 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#126598665) 0.0
gbEF205172.1 (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=Nucleotide&list_uids=138361645&dopt=GenBank&RID=3E0XGK1J015&log$=nucltop&blast_rank=100) Influenza A virus (A/turkey/Suzdalka/12/05(H5N... 2188 (http://www.ncbi.nlm.nih.gov/blast/Blast.cgi#138361645) 0.0
http://tinyurl.com/52dlhu
http://www.recombinomics.com/News/05230805/H5N1_Fujian_Global.html
DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) nucleocapsid
protein (NP) gene, complete cds.
ACCESSION EU672458
VERSION EU672458.1 GI:188526731
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 1540)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..1540
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526731&from=34&to=1530&view=gbwithparts) 34..1530
/gene="NP"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526731&from=34&to=1530&view=gbwithparts) 34..1530
/gene="NP"
/codon_start=1
/product="nucleocapsid protein"
/protein_id="ACD62242.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62242.1)"
/db_xref="GI:188526732"
/translation="MASQGTKRSYEQMETGGERQNATEIRASVGRMVSGIGRFYIQMC
TELKLSDYEGRLIQNSITIERMVLSAFDERRNRYLEEHPSAGKDPKKTGG PIYRRRDG
KWVRELILYDKEEIRRIWRQANNGEDATAGLTHLMIWHSNLNDATYQRTR ALVRTGMD
PRMCSLMQGSTLPRRSGAAGAAVKGVGTMVMELIRMIKRGINDRNFWRGE NGRRTRIA
YERMCNILKGKFQTAAQRAMMDQVRESRNPGNAEIEDLIFLARSALILRG SVAHKSCL
PACVYGLAVASGYDFEREGYSLVGIDPFRLLQNSQVFSLIRPNENPAHKS QLVWMACH
SAAFEDLRVSSFIRGTRVVPRGQLSTRGVQIASNENMEAMDSNTLELRSR YWAIRTRS
GGNTNQQRASAGQISIQPTFSVQRNLPFERATIMAAFTGNTEGRTSDMRT EIIRMMES
ARPEDVSFQGRGVFELSDEKATNPIVPSFDMNNEGSYFFGDNAEEYDN"
ORIGIN
1 gtagataatc actcaccgag tgacatcaac attatggcgt cccaaggcac caaacgatct
61 tatgaacaga tggaaactgg tggagagcgc cagaatgcta ctgagatcag ggcatccgtt
121 ggaagaatgg ttagtggcat tgggagattc tacatacaga tgtgcacaga actcaaactc
181 agtgactatg aaggaagact gatccagaac agcataacaa tagagagaat ggtactttct
241 gcatttgatg aaagaaggaa caggtacctg gaagaacacc ccagtgcggg gaaggacccg
301 aagaaaactg gaggtccaat ttatcggagg agagacggaa aatgggtgag ggagctgatt
361 ctgtacgaca aagaggagat caggaggatt tggcgtcaag cgaacaatgg agaggacgca
421 actgctggtc ttacccacct gatgatatgg cattccaatc taaatgatgc cacatatcag
481 agaacgagag ctctcgtgcg tactggaatg gatcccagga tgtgctctct gatgcaagga
541 tcaaccctcc cgaggagatc tggagctgcc ggtgcagcag tgaagggggt aggaacaatg
601 gtgatggagc tgattcggat gataaaacgg ggaatcaacg accggaattt ttggagaggt
661 gaaaatggaa gaagaacaag gattgcatat gagagaatgt gcaacatcct caaagggaaa
721 ttccaaacag cagcacaaag agcaatgatg gatcaagtgc gagagagcag aaatcctggg
781 aatgctgaaa ttgaagatct catttttctg gcacggtctg cactcatcct gagaggatca
841 gtggcccata agtcctgctt gcctgcctgt gtgtacggac ttgcagtggc cagtggatat
901 gactttgaga gagaagggta ctctctggtt gggatagatc ccttccgtct gcttcaaaac
961 agccaggtct ttagtctcat tagaccaaat gagaatccag cacataagag tcaattagtg
1021 tggatggcat gccactctgc agcatttgag gaccttagag tctcaagttt catcagaggg
1081 acaagagtgg tcccaagggg acagctatcc accagagggg ttcaaattgc ttcaaatgag
1141 aatatggaag caatggactc caacactctt gaactgagaa gtagatattg ggctataaga
1201 accagaagcg gaggaaacac caaccagcag agggcatctg cagggcagat cagcattcag
1261 cccactttct cggtacagag aaaccttccc ttcgaaagag cgaccattat ggcagcattt
1321 acaggaaata ctgagggcag aacgtctgac atgaggactg aaatcataag aatgatggaa
1381 agtgccagac cagaagatgt gtcattccag gggcggggag tcttcgagct ctcggacgaa
1441 aaggcaacga acccgatcgt gccttccttt gacatgaata atgaaggatc ttatttcttc
1501 ggagacaatg cagaggagta tgacaattaa agaaaaatac
DEFINITION Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) polymerase PB1
(PB1) gene, complete cds.
ACCESSION EU672456
VERSION EU672456.1 GI:188526727
KEYWORDS .
SOURCE Influenza A virus (A/chicken/Primorje/1/2008(H5N1))
ORGANISM Influenza A virus (A/chicken/Primorje/1/2008(H5N1)) (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)
Viruses; ssRNA negative-strand viruses; Orthomyxoviridae;
Influenzavirus A.
REFERENCE 1 (bases 1 to 2316)
AUTHORS Usacheva,O.V. and Prilipov,A.G.
TITLE Direct Submission
JOURNAL Submitted (23-APR-2008) Molecular Genetic Laboratory, Ivanovsky
Virology Institute, Russian Academy of Medical Science, Gamalei 16,
Moscow 123098, Russia
FEATURES Location/Qualifiers
source 1..2316
/organism="Influenza A virus
(A/chicken/Primorje/1/2008(H5N1))"
/mol_type="viral cRNA"
/strain="A/chicken/Primorje/1/2008"
/serotype="H5N1"
/specific_host="chicken"
/db_xref="taxon:529073 (http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=529073)"
/country="Russia: Vozdvizhenka, Ussuriisky region,
Primorsky krai"
/collection_date="10-Apr-2008"
gene (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526727&from=13&to=2286&view=gbwithparts) 13..2286
/gene="PB1"
CDS (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=188526727&from=13&to=2286&view=gbwithparts) 13..2286
/gene="PB1"
/codon_start=1
/product="polymerase PB1"
/protein_id="ACD62240.1 (http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?val=ACD62240.1)"
/db_xref="GI:188526728"
/translation="MDVNPTLLFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAF LEESHPGI
FENSCLETMEIVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEIFRS NGLTANES
GRLIDFLKDVMESMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQ RLNKRSYL
IRALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQ SGLPVGGN
EKKAKLANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYIT RNQPEWFR
NVLSIAPIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNDL TKKKIEKI
RPLLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQ SSDDFALI
VNAPNHEGIQAGVDRFYRTCKLVGINMSKKKSYINRTGTFEFTSFFYRYG FVANFSME
LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYT YRCHRGDT
QIQTRRSFELKKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELM DEDYQGRL
CNPLNPFVSHKEIESVNNAIVMPAHGPAKSMEYDAVATTHSWIPKRNRSI LNTSQRGI
LEDEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFES GRIKKEEF
AEIMKICSTIEELRRQK"
ORIGIN
1 caaaccattt gaatggatgt caacccgact ttacttttct tgaaagtgcc agtgcaaaat
61 gctataagta ccacattccc ttatactgga gaccctccat acagccatgg aacagggaca
121 ggatacacta tggacacagt caacagaaca caccaatatt cggaaaaagg gaagtggaca
181 acaaacacag agactggagc accccaactc aacccgattg atggaccact acctgaggat
241 aatgagccca gtgggtatgc acaaacagat tgtgtattgg aagcaatggc tttccttgaa
301 gaatcccacc cagggatctt tgaaaattcg tgtcttgaaa cgatggaaat tgttcaacaa
361 acaagagtgg ataaactgac ccaaggtcgc cagacttatg actggacatt gaatagaaac
421 caaccggctg cgactgcttt ggccaacact atagaaatct tcagatcaaa cggtctgaca
481 gcaaatgaat ctggacggct gatagatttc ctcaaggatg tgatggaatc aatggataag
541 gaagaaatgg agataacaac acatttccag agaaagagaa gagtaaggga caacatgacc
601 aagaaaatgg taacacaaag aacaataggg aagaaaaaac aaaggctgaa caaaaggagc
661 tacctgataa gagcactgac attgaacaca atgaccaagg atgcagaaag aggcaaattg
721 aagaggcgag caattgcaac acccgggatg caaatcagag gattcgtgta ttttgttgaa
781 acactagcga ggagtatctg tgagaaactt gagcaatctg gactcccagt cggagggaat
841 gagaagaaag ctaaattggc taacgtcgtg aggaagatga tgactaactc acaggatact
901 gaactctcct ttacaattac tggggacaat acaaaatgga atgagaatca aaatcctagg
961 atgtttctgg caatgataac gtacatcaca aggaaccagc cagaatggtt tcgaaatgtc
1021 ttaagcattg cccccataat gttctcaaac aaaatggcga gattagggaa aggatacatg
1081 ttcgaaagta agagcatgaa gttacgaaca caaataccag cagaaatgct tgcaaacatt
1141 gaccttaaat acttcaatga cttaacgaaa aagaaaattg agaagataag acctctatta
1201 atagatggta cagcctcatt gagccctgga atgatgatgg gcatgttcaa catgctgagt
1261 acagtcctag gagtttcaat cctgaatctt ggacagaaaa ggtacaccaa aaccacatat
1321 tggtgggacg ggctccaatc ctctgatgat ttcgctctca tcgtaaatgc accgaatcat
1381 gagggaatac aagcaggggt ggatagattt tataggactt gtaaactagt tgggatcaat
1441 atgagcaaga agaagtctta cataaatcgg acagggacat ttgaattcac gagctttttc
1501 taccgctatg gatttgtagc caatttcagt atggagctgc ccagttttgg agtgtctgga
1561 attaatgaat cggccgacat gagcattggt gttacagtga taaagaacaa tatgataaac
1621 aacgaccttg ggccagcaac agctcagatg gctcttcagc tattcatcaa ggactacaga
1681 tacacatacc gatgccacag gggagatacg caaatccaaa cgaggagatc attcgagctg
1741 aagaagctat gggagcaaac ccgttcaaag gcagggctgt tggtttcaga tggaggacca
1801 aatctataca atatccgaaa tctccatatt cctgaggtct gcttgaaatg ggaattgatg
1861 gatgaagact accagggcag actgtgcaat cctctgaatc cattcgtcag ccataaggaa
1921 attgaatctg tcaataatgc tatagtaatg ccagctcatg gtccagccaa gagtatggaa
1981 tatgatgccg ttgcaaccac acattcatgg attcctaaaa ggaatcgttc cattctcaac
2041 acgagtcaaa ggggaattct tgaggatgag cagatgtacc aaaagtgctg caacctattc
2101 gagaaattct tccccagcag ttcgtatcga aggccagttg gaatttccag catggtggag
2161 gccatggtgt ctcgggcccg aattgacgca cgaattgatt tcgagtctgg gaggatcaag
2221 aaagaagagt ttgctgagat catgaagatc tgttccacca ttgaagagct cagacggcaa
2281 aaatagtgaa tttagcttgt ccttcgtgaa aaaatg
#If you have any other info about this subject , Please add it free.# |
