21Mar

Ukraine Cat Sequence at Genbank

Author: wktd  |  Category: enart.gzfn.com
  • New Qinghai sequences at GenBank incluidng cat from the Ukraine

    http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&val=111380027

    More Qinghai from Russian and one NA sequence from Indonesian.


  • Indonesia also in on the action

    DQ661910 (http://flu.lanl.gov/search/view_record.html?accession=DQ661910&database=fluA) A/chicken/Afghanistan/1207/2006 HA (4) 1602 2006 H5N1
    DQ673901 (http://flu.lanl.gov/search/view_record.html?accession=DQ673901&database=fluA) A/chicken/Ivory Coast/1787/2006 HA (4) 1690 2006 H5N1
    DQ676834 (http://flu.lanl.gov/search/view_record.html?accession=DQ676834&database=fluA) A/chicken/Krasnodar/01/2006 HA (4) 1754 2006 H5N1
    ISDN183706 (http://flu.lanl.gov/search/view_record.html?accession=ISDN183706&database=fluA) A/Indonesia/CDC623/2006 HA (4) 1659 2006 H5N1
    ISDN183714 (http://flu.lanl.gov/search/view_record.html?accession=ISDN183714&database=fluA) A/Indonesia/CDC623E/2006 HA (4) 1659 2006 H5N1
    DQ440535 (http://flu.lanl.gov/search/view_record.html?accession=DQ440535&database=fluA) A/swan/Iran/754/2006 HA (4) 1653 2006 H5N1
    DQ412997 (http://flu.lanl.gov/search/view_record.html?accession=DQ412997&database=fluA) A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 (http://flu.lanl.gov/search/view_record.html?accession=ISDN136919&database=fluA) A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    AB263752 (http://flu.lanl.gov/search/view_record.html?accession=AB263752&database=fluA) A/whooper swan/Mongolia/2/06 HA (4) 1745 2006 H5N1


  • Although on HA was released for the new isoaltes in Russia, several shared polymorphisms with a Krasnodor isolate released a few weeks earlier. A newly acquire NA polymorphism also is found on Fujian isoaltes


    ISDN184027 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184027&database=fluA) A/chicken/Hong Kong/947/2006 NA (6) 1349 2006 H5N1
    DQ676836 (http://flu.lanl.gov/search/view_record.html?accession=DQ676836&database=fluA) A/chicken/Krasnodar/01/2006 NA (6) 1367 2006 H5N1
    ISDN138758 (http://flu.lanl.gov/search/view_record.html?accession=ISDN138758&database=fluA) A/chicken/Malaysia/935/2006 NA (6) 1385 2006 H5N1
    ISDN184031 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184031&database=fluA) A/Common Magpie/Hong Kong/645/2006 NA (6) 1361 2006 H5N1
    ISDN138782 (http://flu.lanl.gov/search/view_record.html?accession=ISDN138782&database=fluA) A/duck/Laos/3295/2006 NA (6) 1351 2006 H5N1
    DQ643810 (http://flu.lanl.gov/search/view_record.html?accession=DQ643810&database=fluA) A/Zhejiang/16/2006 NA (6) 1347 2006 H5N1
    DQ095669 (http://flu.lanl.gov/search/view_record.html?accession=DQ095669&database=fluA) A/Duck/Fujian/1734/05 NA (6) 1357 2005 H5N1


  • Here's Fujian in the Omsk schicken

    ISDN184026 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184026&database=fluA) A/chicken/Hong Kong/947/2006 HA (4) 1706 2006 H5N1
    ISDN138756 (http://flu.lanl.gov/search/view_record.html?accession=ISDN138756&database=fluA) A/chicken/Malaysia/935/2006 HA (4) 1721 2006 H5N1
    DQ862003 (http://flu.lanl.gov/search/view_record.html?accession=DQ862003&database=fluA) A/chicken/Sudan/1784/2006 HA (4) 1690 2006 H5N1
    DQ861999 (http://flu.lanl.gov/search/view_record.html?accession=DQ861999&database=fluA) A/chicken/Sudan/2115-12/2006 HA (4) 1707 2006 H5N1
    DQ862000 (http://flu.lanl.gov/search/view_record.html?accession=DQ862000&database=fluA) A/chicken/Sudan/2115-9/2006 HA (4) 1707 2006 H5N1
    ISDN184030 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184030&database=fluA) A/Common Magpie/Hong Kong/645/2006 HA (4) 1662 2006 H5N1
    ISDN138780 (http://flu.lanl.gov/search/view_record.html?accession=ISDN138780&database=fluA) A/duck/Laos/3295/2006 HA (4) 1719 2006 H5N1
    ISDN184028 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184028&database=fluA) A/Japanese White Eye/Hong Kong/1038/2006 HA (4) 1693 2006 H5N1
    ISDN184024 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184024&database=fluA) A/Munia/Hong Kong/2454/2006 HA (4) 1693 2006 H5N1
    DQ643809 (http://flu.lanl.gov/search/view_record.html?accession=DQ643809&database=fluA) A/Zhejiang/16/2006 HA (4) 1281 2006 H5N1
    DQ371928 (http://flu.lanl.gov/search/view_record.html?accession=DQ371928&database=fluA) A/Anhui/1/2005 HA (4) 1704 2005 H5N1
    DQ371929 (http://flu.lanl.gov/search/view_record.html?accession=DQ371929&database=fluA) A/Anhui/2/2005 HA (4) 1704 2005 H5N1
    DQ095629 (http://flu.lanl.gov/search/view_record.html?accession=DQ095629&database=fluA) A/Duck/Fujian/1734/05 HA (4) 1703 2005 H5N1
    DQ230521 (http://flu.lanl.gov/search/view_record.html?accession=DQ230521&database=fluA) A/grebe/Novosibirsk/29/2005 HA (4) 1754 2005 H5N1
    DQ371930 (http://flu.lanl.gov/search/view_record.html?accession=DQ371930&database=fluA) A/Guangxi/1/2005 HA (4) 1704 2005 H5N1
    DQ387854 (http://flu.lanl.gov/search/view_record.html?accession=DQ387854&database=fluA) A/mallard/Bavaria/1/2005 HA (4) 1695 2005 H5N2
    DQ838509 (http://flu.lanl.gov/search/view_record.html?accession=DQ838509&database=fluA) A/teal/Italy/3812/2005 HA (4) 1634 2005 H5N3
    DQ851561 (http://flu.lanl.gov/search/view_record.html?accession=DQ851561&database=fluA) A/teal/Italy/3931/2005 HA (4) 1683 2005 H5N2
    DQ104701 (http://flu.lanl.gov/search/view_record.html?accession=DQ104701&database=fluA) A/duck broiler/Malaysia/F118/08/04 HA (4) 1733 2004 H5N2
    DQ497715 (http://flu.lanl.gov/search/view_record.html?accession=DQ497715&database=fluA) A/quail/Vietnam/177/2004 HA (4) 1695 2004 H5N1
    AM087222 (http://flu.lanl.gov/search/view_record.html?accession=AM087222&database=fluA) A/mallard/Germany/WV1349/03 HA (4) 956 2003 H5
    AF509025 (http://flu.lanl.gov/search/view_record.html?accession=AF509025&database=fluA) A/Chicken/Hong Kong/715.5/01 HA (4) 1668 2001 H5N1
    AF509027 (http://flu.lanl.gov/search/view_record.html?accession=AF509027&database=fluA) A/Chicken/Hong Kong/829.2/01 HA (4) 1368 2001 H5N1
    AF509032 (http://flu.lanl.gov/search/view_record.html?accession=AF509032&database=fluA) A/Chicken/Hong Kong/873.3/01 HA (4) 1537 2001 H5N1
    AY221524 (http://flu.lanl.gov/search/view_record.html?accession=AY221524&database=fluA) A/Chicken/Hong Kong/FY150/01 HA (4) 1705 2001 H5N1
    AF509019 (http://flu.lanl.gov/search/view_record.html?accession=AF509019&database=fluA) A/Chicken/Hong Kong/FY150/01 HA (4) 1644 2001 H5N1
    AY221523 (http://flu.lanl.gov/search/view_record.html?accession=AY221523&database=fluA) A/Chicken/Hong Kong/FY150/01-MB HA (4) 1705 2001 H5N1
    AF509016 (http://flu.lanl.gov/search/view_record.html?accession=AF509016&database=fluA) A/Chicken/Hong Kong/FY77/01 HA (4) 1650 2001 H5N1
    AY221522 (http://flu.lanl.gov/search/view_record.html?accession=AY221522&database=fluA) A/Chicken/Hong Kong/NT873.3/01 HA (4) 1705 2001 H5N1
    AY221521 (http://flu.lanl.gov/search/view_record.html?accession=AY221521&database=fluA) A/Chicken/Hong Kong/NT873.3/01-MB HA (4) 1705 2001 H5N1
    AF509020 (http://flu.lanl.gov/search/view_record.html?accession=AF509020&database=fluA) A/Pheasant/Hong Kong/FY155/01 HA (4) 1674 2001 H5N1
    AY221526 (http://flu.lanl.gov/search/view_record.html?accession=AY221526&database=fluA) A/Pheasant/Hong Kong/FY155/01 HA (4) 1705 2001 H5N1
    AY221525 (http://flu.lanl.gov/search/view_record.html?accession=AY221525&database=fluA) A/Pheasant/Hong Kong/FY155/01-MB HA (4) 1705 2001 H5N1


  • Here's Fujian in the Omsk schickenSchicken? Is that a cross between a swan and a chicken? ;) (Sorry -- I couldn't resist! :p )

    Thanks for all that you do, Dr. Niman -- and for keeping us informed. :)


  • Looks like cat sequence will be like Kradnodar sequnce, which includes polymorphsism from Fijoan strain which is also in wild bird H5N1 in British Columbia (only sequence released from last year)

    ISDN184026 (http://flu.lanl.gov/search/view_record.html?accession=ISDN184026&database=fluA) A/chicken/Hong Kong/947/2006 HA (4) 1706 2006 H5N1
    DQ676834 (http://flu.lanl.gov/search/view_record.html?accession=DQ676834&database=fluA) A/chicken/Krasnodar/01/2006 HA (4) 1754 2006 H5N1
    DQ412997 (http://flu.lanl.gov/search/view_record.html?accession=DQ412997&database=fluA) A/swan/Italy/179/06 HA (4) 1247 2006 H5N1
    ISDN136919 (http://flu.lanl.gov/search/view_record.html?accession=ISDN136919&database=fluA) A/swan/Italy/179/2006 HA (4) 1247 2006 H5N1
    DQ371930 (http://flu.lanl.gov/search/view_record.html?accession=DQ371930&database=fluA) A/Guangxi/1/2005 HA (4) 1704 2005 H5N1
    DQ826532 (http://flu.lanl.gov/search/view_record.html?accession=DQ826532&database=fluA) A/mallard/BC/373/2005 HA (4) 1687 2005 H5N2
    DQ320893 (http://flu.lanl.gov/search/view_record.html?accession=DQ320893&database=fluA) A/chicken/Guangxi/2439/2004 HA (4) 1693 2004 H5N1
    DQ320892 (http://flu.lanl.gov/search/view_record.html?accession=DQ320892&database=fluA) A/duck/Guangxi/2396/2004 HA (4) 1698 2004 H5N1
    AB241624 (http://flu.lanl.gov/search/view_record.html?accession=AB241624&database=fluA) A/duck/Hokkaido/101/04 HA (4) 1624 2004 H5N3
    AB241625 (http://flu.lanl.gov/search/view_record.html?accession=AB241625&database=fluA) A/duck/Hokkaido/193/04 HA (4) 1613 2004 H5N3
    AB241626 (http://flu.lanl.gov/search/view_record.html?accession=AB241626&database=fluA) A/duck/Hokkaido/299/04 HA (4) 1630 2004 H5N3
    DQ320891 (http://flu.lanl.gov/search/view_record.html?accession=DQ320891&database=fluA) A/goose/Guangxi/2383/2004 HA (4) 1698 2004 H5N1
    CY005927 (http://flu.lanl.gov/search/view_record.html?accession=CY005927&database=fluA) A/shorebird/Delaware/101/2004 HA (4) 1766 2004 H5N7
    CY005969 (http://flu.lanl.gov/search/view_record.html?accession=CY005969&database=fluA) A/shorebird/Delaware/75/2004 HA (4) 1766 2004 H5N7
    DQ497670 (http://flu.lanl.gov/search/view_record.html?accession=DQ497670&database=fluA) A/duck/Vietnam/15/2003 HA (4) 1695 2003 H5N1
    AY296079 (http://flu.lanl.gov/search/view_record.html?accession=AY296079&database=fluA) A/duck/ME/151895-7A/02 HA (4) 1691 2002 H5N2
    AY296083 (http://flu.lanl.gov/search/view_record.html?accession=AY296083&database=fluA) A/turkey/CA/D0208651-C/02 HA (4) 1708 2002 H5N2
    AY296077 (http://flu.lanl.gov/search/view_record.html?accession=AY296077&database=fluA) A/duck/NJ/117228-7/01 HA (4) 1691 2001 H5N2
    AY296078 (http://flu.lanl.gov/search/view_record.html?accession=AY296078&database=fluA) A/unknown/NY/118547-11/01 HA (4) 1691 2001 H5N2
    AY296075 (http://flu.lanl.gov/search/view_record.html?accession=AY296075&database=fluA) A/unknown/NY/9899-6/01 HA (4) 1735 2001 H5N2
    AY296084 (http://flu.lanl.gov/search/view_record.html?accession=AY296084&database=fluA) A/ruddy turnstone/NJ/2242/00 HA (4) 1691 2000 H5N3
    U79451 (http://flu.lanl.gov/search/view_record.html?accession=U79451&database=fluA) A/Mallard/Wisconsin/34/75 HA (4) 996 1975 H5N6
    U79456 (http://flu.lanl.gov/search/view_record.html?accession=U79456&database=fluA) A/Turkey/Wisconsin/68 HA (4) 1647 1968 H5N9
    M30122 (http://flu.lanl.gov/search/view_record.html?accession=M30122&database=fluA) A/turkey/Ontario/7732/66 HA (4) 1770 1966 H5N9
    AB241613 (http://flu.lanl.gov/search/view_record.html?accession=AB241613&database=fluA) A/turkey/Ontario/7732/66 HA (4) 1472 1966 H5







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